Hi Joel,
The trick is to have all the atoms through out the morph in every single
pdb.
Thus, pdb1 needs to have ligands from pdb2 and pdb3 and so forth.
Move the non-bound ligands out of the binding site for every pdb.
If you run Rigimol now you will see the ligands, in turn, bind to the
bindi
PyMOLers,
(1) If you follow the PyMOLWiki closely enough, then you might be
interested in knowing that you can follow all changes to the wiki via
RSS. From the following link choose "RSS" or "atom" in the lower
left-hand side:
http://pymolwiki.org/index.php/Special:RecentChanges
(2)
Hi all,
I am playing around with the new PyMOL 1.2 release and was hoping to use the
Movie Panel in conjunction with a loaded DCD trajectory file. However, after
loading the MD trajectory and setting "movie_panel" to 1 I don't see the
prescribed time line below the viewing area. Of course, i
Sean,
The movie panel operates on movie frames, not trajectory states, so you need to
create a relationship between them. A one-to-one relationship can be created
using the Python command:
cmd.mset("1 -%d" % cmd.count_states())
Or alternatively, you can use the new Movie -> Program -> State L
