[PyMOL] transpaerncy between different objects

2009-06-12 Thread hodak
Hello, I am working with two copies of a molecule (moved relative to each other), each being a separate object. Cartoons in both are set to be transparent (cartoon_transparency=0.5), but after ray tracing there is no transparency (or shadows) between objects (first objects completely obscures t

Re: [PyMOL] transpaerncy between different objects

2009-06-12 Thread Tsjerk Wassenaar
Hi Miro, This one's in the archive, but it was also in my gmail archive, which made it easy to dig up. The setting you need is "transparency_mode": set transparency_mode,1 This should give you the behaviour you expect for multiple transparent surfaces. In addition, you may want to have a look at

[PyMOL] compilation problem with the latest pymol

2009-06-12 Thread Vivek Ranjan
I downloaded the latest pymol by using the following command: svn co https://pymol.svn.sourceforge.net/svnroot/pymol/trunk/pymol pymol Then, while running the command "python setup.py install", I encountered the following: In file included from layer5/main.h:35, from layer0/Bloc

Re: [PyMOL] compilation problem with the latest pymol

2009-06-12 Thread Pete Meyer
Looks like you need to install the appropriate python-dev package (or otherwise point setup.py to the appropriate include directory if you build python from source). Vivek Ranjan wrote: > I downloaded the latest pymol by using the following command: > > svn co https://pymol.svn.sourceforge.net/