[PyMOL] object-specific Z-clipping

Dear all, Does anyone know whether object-selective z-clipping has been implemented in the newer Pymol version(s)? If not, has anyone found any solution around (since 2002 no new threads on the matter)? Thanks, Shura Mankin

[PyMOL] form and break bonds in movie

Hi there, First post here, so hello to everybody! I would like to produce a movie where covalent bonds break and form. However, when I load the .pdb files in PyMOL and play a movie, the bond status (formed or broken) stays the same as seen on the first state, even if bond lenghts change consi

[PyMOL] form and break bonds in movie

Hi there, I would like to produce a movie where bonds break and form. However, when I load the .pdb files in PyMOL, the bond status (formed or broken) stays the same as seen for the first state, even if the bond lenghts change considerably. Any tips on how to do this are welcome. I have goggled

Re: [PyMOL] form and break bonds in movie

Whoops, my bad -- I duped the approval before seeing your repost! Answer: # first create a phony molecular trajectory load $PYMOL_PATH/test/dat/pept.pdb, obj for a in range(2,31): cmd.create("obj","obj",1,a) unbond 5/c, 6/n protect not ((5/c or 6/n) extend 4) sculpt_activate obj, 30 scul

Re: [PyMOL] object-specific Z-clipping

Sorry, still not done (I have made two attempts, but both failed). While OpenGL supports arbitrary clipping planes, accomplishing this correctly in the ray tracer is a much harder problem that one might think... Cheers, Warren > -Original Message- > From: Mankin Alexander [mailto:sh...@u

Re: [PyMOL] object-specific Z-clipping

BS"D There is a workaround to this problem, which I used in a different program and have suggested in the past to Warren and others. If getting the ray tracer to recognize the various clipping planes is difficult, this is probably the best solution. It would be helpful, however, if