Re: [PyMOL] where to find a 64 bit Linux version?

2009-03-18 Thread Warren DeLano
Tom, DeLano Scientific doesn't itself manage the open-source packages, but we do serve up current Linux 32 & 64-bit builds to PyMOL project sponsors as per: http://pymol.org/funding.html The error message suggests that you are trying to link a 64-bit library to a 32-bit binary -- that will not

Re: [PyMOL] where to find a 64 bit Linux version?

2009-03-18 Thread Tim Fenn
On Wed, 18 Mar 2009 01:03:07 +0200 Thomas Evangelidis wrote: > Dear Pymol users, > > does anyone know where I can find a 64 bit version for my Fedora 10. > The package from the repositories works fine but when it comes to > install new plugins it yields error messages. As a matter of fact I

[PyMOL] alter resi from command line

2009-03-18 Thread Magnus Andersson
Hi, I want to alter the secondary structure on a part of my protein. Normally I do: alter resi 225-232, ss='h' show cartoon, protein But if I want to add this in a movie script? I tried: cmd.alter_resi(225-232, ss='h') But that did not work. I looked in the user manual & couldn't find API synt

Re: [PyMOL] alter resi from command line

2009-03-18 Thread Tsjerk Wassenaar
Hi Magnus, The command is 'alter', not 'alter resi' or 'alter_resi'. The function is therefore 'cmd.alter()', which takes as first argument a selection string and as second an operation string (expression). The key aspects to understand are that (most) commands have associated functions cmd.comman

Re: [PyMOL] where to find a 64 bit Linux version?

2009-03-18 Thread Thomas Evangelidis
Thank you all, the problem has been resolved. I was confused with the part of the instructions saying PyMOL Plugins need to be installed in $PYMOL_PATH/modules/pmg_tk/startup. I was also trying to install LigAlign from Plugin->Install Plugin... before reading the respective documentation...