[PyMOL] how rotate a protein in a movie sequence

2009-03-17 Thread Magnus Andersson
Hi, and thanks for the help with my earlier question - it solved the problem. I want to rotate my protein within a movie to show morphing from different angles. I try to use mdo for this, but the screen turns black during this operation - frame 280 - 340. Here's my script: # first all basic stu

Re: [PyMOL] how rotate a protein in a movie sequence

2009-03-17 Thread Warren DeLano
> cmd.madd ('280 x60') > cmd.mdo('280:', 'turn x,5;', 'turn y,5;') > cmd.mplay Should be: cmd.madd('1 x60') cmd.mdo('280', 'turn x,5;turn y,5;') > -Original Message- > From: Magnus Andersson [mailto:m...@farma.ku.dk] > Sent: Tuesday, March 17, 2009 5:42 AM > To: pymol-users@lists.source

Re: [PyMOL] Show Dashes

2009-03-17 Thread Warren DeLano
Good question! We need to add some additional menu items for groups... in the meantime use a command: show dashes, group-name Cheers, Warren From: Bradley Hintze [mailto:bradle...@aggiemail.usu.edu] Sent: Monday, March 16, 2009 2:57 PM To: pymol-

[PyMOL] how rotate a protein in a movie sequence (continued)

2009-03-17 Thread Magnus Andersson
Hi again, Ok, adding cmd.madd ('1 x60') cmd.mdo('280', 'turn x,90') cmd.mplay makes the protein turn in the way I'd like, but it makes this immediately. What I would like is to have this as a smooth transition over 60 frames. Is there a way to do this? Best regards / Magnus -- Magnus Anders

Re: [PyMOL] how rotate a protein in a movie sequence (continued)

2009-03-17 Thread Warren DeLano
Magnus, Yes, use a Python loop to program the movie: for frame in range(280,321): cmd.mdo(frame, 'turn x,1.5') Incidentally, this is how you could load your files in as well: for state in range(1,51): cmd.load('morph_%d.pdb'%state,'mov',state) Cheers, Warren > -Original Message- > F

Re: [PyMOL] how rotate a protein in a movie sequence (continued)

2009-03-17 Thread Wladimir Labeikovsky
Hi Warren, is this how the "center/origin" command works in pymol? cheers, wlad On Mar 17, 2009, at 3:09 PM, Warren DeLano wrote: Magnus, Yes, use a Python loop to program the movie: for frame in range(280,321): cmd.mdo(frame, 'turn x,1.5') Incidentally, this is how you could load your fi

[PyMOL] where to find a 64 bit Linux version?

2009-03-17 Thread Thomas Evangelidis
Dear Pymol users, does anyone know where I can find a 64 bit version for my Fedora 10. The package from the repositories works fine but when it comes to install new plugins it yields error messages. As a matter of fact I can't even figure out where the whole program is installed (used loc

Re: [PyMOL] where to find a 64 bit Linux version?

2009-03-17 Thread Marius Retegan
Hi Tom, On Wed, Mar 18, 2009 at 12:03 AM, Thomas Evangelidis wrote: > Dear Pymol users, > > does anyone know where I can find a 64 bit version for my Fedora 10. > The package from the repositories works fine but when it comes to > install new plugins it yields error messages. As a matter of fact