Re: [PyMOL] Scripts on Mac

2008-02-29 Thread Sadler, Evan
That sounds reasonable to me but I know next to nothing about python. Maybe I should have included the misbehaving script, which was taken directly from the PyMOL wiki script library: ## This is just a quick hack. For something more meaty see; ## http://arcib.dowling.edu/sbevsl/ ## Version 0.0.0

Re: [PyMOL] Scripts on Mac

2008-02-29 Thread DeLano Scientific
Evan, Hmm -- the code you posted seems to work just fine with the "run" command when saved as a text file, so my next guess is that perhap you're saving the script as something other than text? (RTF perhaps?) HINT: If using TextEdit, select "Make Plain Text" from the Format menu. Cheers, Warr

[PyMOL] Measuring surface roughness using Pymol

2008-02-29 Thread Andy Cheesman
Hi people I've been using pymol to render molecule models which represent a surface and I was wondering if it possible to extract the Surface view information of a molecular to a python object like an array. I'm hoping to use this information to investigate the roughness along a particular cr