Hello:
Im new at pymol and would like to obtain the
coordinates of the dots that make up the
solvent-accessible surface. I can obtain the vertices
using cmd.get_povray()[1], but that will give me a
list of coordinates of open cylinders with spheres at
either end. Perhaps these sphere and cylinder
Hello John,
On Thu, 22 Nov 2007 12:36:32 -0800 (PST), JJ
wrote:
> Hello:
> Im new at pymol and would like to obtain the
> coordinates of the dots that make up the
> solvent-accessible surface. I can obtain the vertices
> using cmd.get_povray()[1], but that will give me a
> list of coordinates o
'turn z, 270'
(sorry)
On Tue, 20 Nov 2007, Vincent Chaptal wrote:
Hello,
I am trying to make a picture for a cover and I am wondering how to make
a vertical image.
(Pymol creates horizontal images, and journal covers are vertical)
Is there a way to creates those
Dear all,
I would like to know if there is a way to measure between surfaces
(actually two parts of one surface) in pymol or another program. We would
like to measure the active site of our enzyme structure, and noticed that
authors of related structures had done this type of measurement wit
>>
From: Robert Campbell -
2007-11-22 21:56
Rather than use PyMOL's surface, I've used the
triangulated surface output
by Michel Sanner's msms program. <<
Thanks much Rob. Can you please tell me why it might
be better to use msms to calculate surface points
rather than the pymol algorithm. Ar
>>
From: JJ - 2007-11-22 20:36
Hello:
Im new at pymol and would like to obtain the
coordinates of the dots that make up the
solvent-accessible surface.<<
I should have also asked in my original post, is there
a way in pymol to determine the solvent-accessible
surface for a particular atom? Or mo
