Re: [PyMOL] questions

Hi Chandra If the sequences have some similarity, it is no problem :-) align structure1 and chain B and name CA, structure2 and chain C and name CA All the best Esben > -Original Message- > From: pymol-users-boun...@lists.sourceforge.net > [mailto:pymol-users-boun...@lists.sourc

[PyMOL] Few questions...

Hi! I have a number of questions:

[PyMOL] Few questions

Hi! I have a number of questions: 1. If in a script I print several lines with a for cycle, the middle of the thing is missing (actualy the most of it) in the output window of PyMOL Tcl/Tk GUI... why could that be? 2. How can I determine the actual color of an atom in a model? (Independently of

[PyMOL] delete states

Hi there, is there an command i overlooked to delete states? I am loading trajectories in a structure and it would be great if one could delete the frames or frame ranges. Cheers Martin

Re: [PyMOL] delete states

Martin, Sorry, this capability does not exist at present, although it wouldn't be too hard to implement. One workaround would be to use the create command to copy out only those frames you need into a new object. create new_traj, old_traj, 5, 1 create new_traj, old_traj, 6, 2 create new_traj,

[PyMOL] min_mesh_spacing

Dear all, using "set min_mesh_spacing, " does not seem to have any effect on my maps. (Yes, I set this before loading the map and creating the mesh.) Am I missing something? Or is 0.6 the lowest mesh spacing allowed ... Thanks for all answers and suggestions, Dirk.