Hi Warren and all,
I finally managed to solve my problem:
here'e where I found the inspiration:
http://discuss.pcmag.com/forums/1004327277/ShowPost.aspx
"The setup utility is a 16-bit app (as you have guessed), and it may
gag if the path to its home folder is too long"
I simply moved the i
Hi there,
i am trying to render fieldlines and sf potential together in a movie.
The movie setup is like this:
import os
set gradient_spacing=5
load ProtOut.pdb,prot
load trajshort.xtc,prot
mset 1 -7
show surface
set surface_solvent=1
for a in range(1,7): cmd.mdo(a,"delete flines;delete dxmap;de
Martin,
Just FYI, the gradient display in PyMOL you and I have been working on is
still too immature to be considered supportable or supported. Indeed, prior
to your post, you were one of the few PyMOL users even aware of it.
For everyone else, I suppose I should announce that one of the many ne
Matt,
Three points:
(1) PyMOL's sculpting feature isn't a forcefield, so it is best to clean up
any pose you" sculpt" with a molecular mechanics forcefield minimization
afterwards (using external software, such as the Swiss PDB viewer).
(2) Unless bonding information is provided in the file, PyM
Hi,
When two SDF files, each of which contains multiple entries, are loaded,
it seems PyMOL can only display the same frames from the two objects.
It goes like frame 1 in obj 1 and frame 1 in obj 2, and cannot do like
frame 1 in obj 1 and frame 3 in obj 2. I was wondering if there is a
way to
Frank,
set state, state-number, object-name
set state, obj1, 1
set state, obj2, 3
You can also use the freeze and thaw options in the object's action menu to
freeze an object into the current state independent of the global state.
Cheers,
Warren
From: pymol-u
