[PyMOL] Coloring structure by hydrophobicity

2006-12-12 Thread Andrew D. Fant
Afternoon all, I apologize if this has been hashed over on the list in the past. I haven't been keeping up like I used to. Is there a good way to calculate and color residues by hydrophobicity in pymol? A google search showed only a very simple script that was based entirely on a single-resi

[PyMOL] RMS values output to plugin?

2006-12-12 Thread Brett Hanson
I am trying to get the RMS values from pymol's align function to print into a plugin I've made. I have so far been unable to pipeline the info out and have not found a way to call back RMS values in pymol's cmd line. I have also not been able to figure out how to use the align function source c