Hi Michael,
I think we face confusion between different types of radii... However I'm
not a chemist.
In PyMOL, what the "sphere" representation shows is the van der Waals
radius, which by definition is determined from measurements of atomic
spacing between pairs of unbonded atoms in crystals (wiki
Hi,
You can do this using alter_state:
alter_state 1,selection,(x,y,z) =
(a11*x+a12*y+a13*z+d1, a21*x+a22*y+a23*z+d2,
a31*x+a32*y+a33*z+d3)
where a11-a33 are the matrix elements (check whether they have to be
transposed) and d1-d3 are the elements of the shift vector.
It may
