Re: [PyMOL] error in loading pdb file

2006-06-30 Thread Tsjerk Wassenaar
Hi Dong, My guess is (but ofcourse Warren knows best) that pymol chokes in the full pathname, including the spaces. Note that under windows the actual pathname would be D:\DOCUME~1\1LTL.pdb The long pathname is an alias. Cheers, Tsjerk On 6/29/06, LIU Changdong wrote: Dear all: After I inst

Re: [PyMOL] spheres representation and atomic / ionic radii

2006-06-30 Thread Tsjerk Wassenaar
Hi Michael, The answer to the second question is: yes alter selection,vdw=1.0 will change the radius of selected atoms to 1.0 angstrom. Cheers, Tsjerk On 6/30/06, Michael Weber wrote: Hi, I have a question concerning the "spheres" representation. According to my rough estimation the sphere

Re: [PyMOL] PyMol question?

2006-06-30 Thread William Scott
Hi Mark: Most likely there is, but I don't know the answer to your question. I'm posting this to the pymol users list (via cc) so hopefully someone else will know the answer. I trust all is going well for you. Bill On Jun 30, 2006, at 8:19 AM, Mark Collins wrote: Hi Bill, I've been lo

Re: [PyMOL] PyMol question?

2006-06-30 Thread Peter Adrian Meyer
The easiest way I'm aware of to do this would be to use the ccp4 program pdbset, but there are numerous other ways/programs that will do this (if pymol has this capacity, I'm not aware of it; but someone else will correct me). Pete >> I've been looking through the PyMol reference and wiki page

[PyMOL] Geowall and Mac with Quadro FX 4500

2006-06-30 Thread Stephen Miller
Hi All, We've acquired a geowall system which will likely be attached to a intel Mac tower. Does anyone know if the OS X drivers for the quadro fx 4500 will support the dual monitor clone mode necessary to drive quadbuffered stereo on the geowall? Anyone actually done this? Everything I

[PyMOL] Manual updates?

2006-06-30 Thread Dr. Mark Mayer
Hi, This is really for Warren. A while ago there was discussion of the ± of updates versus new manuals. The current documentation is now several years out of date. Are their plans to update this? Thanks to all who have worked on Wiki and posted scripts on web sites. Mark --