RE: [PyMOL] drawing walls

2006-04-05 Thread Grégori Gerebtzoff
Dear Liu Shiyong, Please have a look to the nice page of Gareth Stockwell, http://www.ebi.ac.uk/~gareth/, you will find under the section -pymol- some nice pymol scripts, and in particular wall.py The script is commented so have a look inside to find how you shall use it... You might also change t

[PyMOL] Re: Ray-tracing inner surface backside

2006-04-05 Thread Paul Wilhelm Elsinghorst
So, I tried rendering using transparency_mode = 1 or 0 and got this result: http://pwe.no-ip.org/other/Pymol2.png Is there a way to get rid of the transparency that darkens some parts of the surface where something lies behind? I also tried povray to render the surface and it gives me a tex

[PyMOL] labels not displaying

2006-04-05 Thread Yoder, Marilyn
This is an unusual and annoying problem. I'm running the latest version of Pymol on two PC machines, one in my office and one at home. I cart my session file on a jump drive back and forth. On my PC at home, the session file displays the labels just fine and dandy. But using the same session f

RE: [PyMOL] manual vs. more features

2006-04-05 Thread Fischmann, Thierry
The point that some have made about Pymol having reasonable documentation is well-taken. But new features do not get used much - or at least not to their full potential - if they are not documented. Hence there is little point adding more and more features without keeping the manual current. By