[PyMOL] Re: invoking pymol the unix way on os x

2006-02-24 Thread William Scott
You can call the executable inside an application and it will work in the normal unix way, eg /Applications/MacPyMOL.app/Contents/MacOS/MacPyMOL You might want to make an alias or a function or a symbolic link like alias pymol=/Applications/Xtal/MacPyMOL.app/Contents/MacOS/MacPyMOL or pymol(

[PyMOL] align/fit

2006-02-24 Thread Enrico Malito
Hi all, I'm using macPyMOL 0.99rc1 and found very useful the commands align&pair_fit to do superposition. I'm just wondering which specific algorithm they use, if somebody never used them to do superposition of Ca trace for publications, and if there is a specific reference to them. Thank