RE: [PyMOL] NAMD/dcd

2006-02-12 Thread EPF (Esben Peter Friis)
Hi Arturas! A - relatively - easy way to read DCDs into PyMOL is: * Convert the .dcd to .trr using "catdcd 4.0" (http://www.ks.uiuc.edu/Development/MDTools/catdcd/). At the same time you can concatenate multiple .dcd files, remove solvent, skip frames, etc. * Convert the .trr file to a mult

RE: [PyMOL] movie of diffusion of atoms/molecules

2006-02-12 Thread EPF (Esben Peter Friis)
Hi Satya You can use the command "translate" to move the individual objects in pymol. Is takes a list of 3 floating points numbers as the translational vector. I don't know how Pymol would handle 4000 objects, but an alternative might be to load them as states within one object, and then use