Hi Arturas!
A - relatively - easy way to read DCDs into PyMOL is:
* Convert the .dcd to .trr using "catdcd 4.0"
(http://www.ks.uiuc.edu/Development/MDTools/catdcd/). At the same time you can
concatenate multiple .dcd files, remove solvent, skip frames, etc.
* Convert the .trr file to a mult
Hi Satya
You can use the command "translate" to move the individual objects in pymol. Is
takes a list of 3 floating points numbers as the translational vector.
I don't know how Pymol would handle 4000 objects, but an alternative might be
to load them as states within one object, and then use