[PyMOL] Atom labels problem

Hi, I have a problem using pymol (ver. 0.98) on my Linux box. I start pymol, load a molecule (different size, format, no matter) and then I try to load atom labels ( L-> "Atom Name"). Pymol "hangs" after that or it's better to say that it works, but very very slowly and I see no atom labels. On

[PyMOL] rot+trsl matrices

Hello, I would like to dock several molecules into a map and display a score in real time (i.e., as the molecules are moved around with the mouse). For that I have to retrieve the rotation+translation matrix for each molecule while it is being moved around, to feed it into a scoring algor

RE: [PyMOL] Atom labels problem

Alexey, Some video drivers don't draw fonts well as bitmaps, so try textures: set texture_fonts Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 USA .

[PyMOL] Moving Selections

I want to move one protein while keeping another fixed. How do I do this? Thanks so much. ~Lauren

RE: [PyMOL] Moving Selections

Lauren, Load the proteins as separate objects, put the mouse into 3-button editing mode, then shift-middle click-and-drag on the molecule to translate and shift-left-click-and-drag to rotate. Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific

RE: [PyMOL] rot+trsl matrices

Provided objects are moved in their entiretly, recent PyMOL betas may provide what you want via cmd.get_object_matrix(object-name) Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South