Re: [PyMOL] antialiasing and povray

2005-07-25 Thread andrea spitaleri
try povray +A0.3 file.pov zero -^ regards Cameron Mura wrote: hi, Is there anything special I need to do/set to achieve antialiased images via pymol + POV-ray? To be more explicit, i'm using robert campbell's make_pov.py to have pymol dump the scene into a povray input file, and

Re: [PyMOL] (no subject)

2005-07-25 Thread lieven
On Sunday 24 July 2005 05:42, yi zhang wrote: > cmd.symexp('sym', 'obj', 'obj',10 ) > > of course, I can manually save each symmetry-related > molecule to *.pdb file by clicking save molecule > button, but how can I write a script to save all of > them or part of them? the symmetry-related objects

[PyMOL] [OT] alternative python module

2005-07-25 Thread andrea spitaleri
Hi all, I am using pymol also for python scripting and perlmol for perl scripting. They are both very nice. I am just wondering if there are some other useful python modules around for chemistry. Sorry for the OT. Regards, andrea

Re: [PyMOL] [OT] alternative python module

2005-07-25 Thread Jerome PANSANEL
Hello, You can find modules inside some software package, like: PyQuante (http://pyquante.sourceforge.net/) FROWNS (http://frowns.sourceforge.net/) MMTK (http://starship.python.net/crew/hinsen/MMTK/) All these software are free software. Regards, Jerome PANSANEL -- Jerome PANSANEL http://www.a

Re: [PyMOL] [OT] alternative python module

2005-07-25 Thread andrea spitaleri
Hi thanks to all for the links. and something a bit closer to pymol? more focused on biological files... thanks again Regards andrea Jerome PANSANEL wrote: Hello, You can find modules inside some software package, like: PyQuante (http://pyquante.sourceforge.net/) FROWNS (http://frowns.so

[PyMOL] Media Request July 25th

2005-07-25 Thread Warren DeLano
PyMOL Users: One of the IT trade journals is doing a little piece on open-source business that will probably cover PyMOL/DeLano Scientific and they would like to talk with a some PyMOL users -- ideally paying subscribers from biotech, pharma, and academia. If you would like to participate, then p

[PyMOL] MovF and RotF problems

2005-07-25 Thread S. Frank Yan
Hi, I was trying to use the MovF and RotF functions in the 3-Buttion Editing mode using version 0.98. The molecule is deformed with one single atom being totally out of the place during the movement. Does anyone have the same problem? Thanks a lot, Frank