[PyMOL] Generating a 3D Object in any position

Hi everybody, I want to vizualize 3D-ellipsoids around molecules. Is there any built-in PyMOL/Python method to do so? If not: how am I going to generate ellipsoids or dots at any position (x,y,z) in the space? Thanx for your help. cheers, Yusuf

[PyMOL] Pymol 0.98 standalone vs. PyMol 0.97 in Phenix under linux

Hi, I have just installed linux (SUSE 9.2) on my PC and downloaded PyMol v.0.98. I see some ghosting when I resize the window (the right vertical menu bar resizes with a delay and several intermediate steps are seen before it reaches its final position). I also downloaded PHENIX which has PyMol v

Re: [PyMOL] Generating a 3D Object in any position

Hi, I got curious about this, did a search through the docs, did a google, and now (a day later) I have a partial solution. I should get back to work... I've posted on the wiki: http://www.pymolwiki.org/index.php/Ellipsoid a script which makes ellipsoids. yellow ones, although that is easily ch

Re: [PyMOL] Generating a 3D Object in any position

On Mon, Jul 11, 2005 at 11:17:14PM +0100, Gilleain Torrance wrote: > > I got curious about this, did a search through the docs, did a google, and > now (a day later) I have a partial solution. I should get back to work... > If you check out: http://www.stanford.edu/~fenn/scripts.html I have a

[PyMOL] Linux NVidia segmentation fault

Hi everybody, I have read in the thread about the infamous "segmentation fault" issue concerning NVidia Linux drivers and PyMOL. Warren says that starting from release 7664 the problem has been solved, but I still experience the segmentation fault when working with medium sized proteins using su

[PyMOL] changing stick color

Hi, I am using pymol ver 0.98. I want to display ligand binding site, with metal atom as sphere and other residues as sticks. To do this , I selected ball-and-stick from "preset" menu, subsequently switched off spheres for residues. But stick color is not able to be replaced. How can I change stic