RE: [PyMOL] Video iChat / PyMOL Discussion

2005-06-22 Thread Grégori Gerebtzoff
Hi, I'm on WinXP and I use Skype for a long time, and the sound quality is amazing; I just discovered vSkype, a video plugin for Skype. It can handle up to 200 users simultaneously, and you can also share your desktop or just a part of your desktop (i.e. a window). Skype is available for multiple

[PyMOL] camera and clipping planes

2005-06-22 Thread Neil Ranson
Dear All, Is there a way in which you can rotate the camera (say turn y, 90) whilst leaving the clipping planes (and objects) where they are? I want to an oblique slab a slice through an electron density map (which I can do fine), and then rotate around y by 90deg to see the "side view" of that cu

Re: [PyMOL] colouring surfaces according to molecular properties

2005-06-22 Thread T.A.Wassenaar
Hi Anders, With cmd.get_povray() (i.e. cmd.get_povray()[1]) you'll get all vertex-coordinates describing the surface, but I wouldn't know how you could use it to map something on there neatly. Cheers, Tsjerk On Wed, 22 Jun 2005 08:55:05 +0200 madsen wrote: Dear Robert, Tsjerk, Jean-Phil

[PyMOL] Simple zoom script not working

2005-06-22 Thread Reinhold Penner
Hi list, I'm very new to PyMOL, so please be gentle. I use macPyMOL 0.98 I ran into a problem when trying to run what may seem like a very simple script in order to create a movie that zooms into a ligand binding site of a protein: set ray_trace_frames, 1 set cache_frames, 0 se