RE: [PyMOL] Problem with pml script and png command

2005-03-31 Thread Grégori Gerebtzoff
**PROBLEM FIXED** I found yesterday a way to avoid the problem. First I launch PyMol, then I change the viewport to the one I have in my script; and finally I run the pml script. This gives full, uncutted png images. Btw, does anybody know if there is a python command to wait until a proc

[PyMOL] atom reordering in pdb

2005-03-31 Thread aneamtu
Hi all, Is there any possibility to avoid reordering of the atoms when a pdb file is saved with pymol? Greetings, Andrei

RE: [PyMOL] atom reordering in pdb

2005-03-31 Thread Warren DeLano
set retain_order sort Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 Cell:(650)-3

RE: [PyMOL] Problem with pml script and png command

2005-03-31 Thread Warren DeLano
Greg, Actually, this a fundamental problem with the way the GLUT library works -- it uses callbacks instead of events, which causes refresh issues on Windows. The problem has nothing to do with Python -- PyMOL is all C when it comes to OpenGL. Suffice it to say that we are aware of and working

Re: [PyMOL] Fitting/alignment of non-identical sequences -- UPDATE

2005-03-31 Thread Robert Campbell
Dear Folks, * I [2005-03-29 16:27] wrote: > After playing around with > this I finally got tired of doing it manually, so of course I wrote a > python script to do this. It uses the alter command (so it isn't fast!) > to modify the alt, name, resn, resi, chain, and segi values to match in > the

[PyMOL] NVidia Drivers & Nuccyl

2005-03-31 Thread tree
NVidia: I just got the 7174 driver (for 64-bit Linux). PyMol works fine, no crashes. What do other folks see with 7174? My openGL apps run nominally faster on 7174 than they do on 6629. Nuccyl: As there was little response from the PyMol audience, I will go ahead an add Nuccyl to the PyMol wiki