[PyMOL] Moving electon density map together with the structure

Hi All, I solved several X-ray structures of similar proteins, in different spacegroups. I want to make figures for comparison of these structures, together with the electron density maps, and I want them in the same orientations. I superpose the structures in PyMol, but I can't find a way to move

RE: [PyMOL] Moving electon density map together with the structure

Laurent, Map tranformation is a high priority development item, but it isn't possible yet in PyMOL... Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080

[PyMOL] electron density map manipulation

Hi, I have been trying to visualize a DN6 electron density map. Although it is read in apparently correctly nothing shows on the screen. Are there any particular parameters to be set? I can visualize it in SwisspdbViewer but I was unable to produce surface rendering. Can Pymol produce a surfac

[PyMOL] customizing secondary structure assignments

Hello All, Is there a way to have the automatic secondary structure assignments output in the Pymol log-file explicitly (eg HELIX from resi 1-100, LOOP from 101-110 etc) much like MOLAUTO is able to do? I realize that secondary structure assignment in Pymol is not always correct, but I would