Re: [PyMOL] pymol crashes with very large structures?

2005-01-10 Thread Yu Chen
I did it on RedHat EL-AS-3, Intel 1.7GHz, single cpu, 512MB memory, GeForceFX 5600 (256MB Mem on chip) without problem, it took about 5-6 mins to load with the same commands as Douglas has run. Chen On Sun, 9 Jan 2005, Douglas Kojetin wrote: I didn't keep track of how long it took (and it too

[PyMOL] rms

2005-01-10 Thread Teresa
Hi to all I'm trying to use the rms_cur command and I was successful when I did this: >select selection1, (object1 and i. 57 and (name c,o,n,ca)) >select selection2, (object2 and i. 57 and (name c,o,n,ca)) >rms_cur selection1, selection2 but when I try to specify the chain with the resid

[PyMOL] rms- again :(

2005-01-10 Thread Teresa
Hi to all Here I am again dealing with this rms command, see I want to do is to get the rms between two residues, one is in the subunit of the oxidized state of the protein while the other is in the same subunit but of the reduced state of the protein and I can't make it to work. At this point

[PyMOL] rms

2005-01-10 Thread Teresa
Hi to all I'm trying to use the rms_cur command and I was successful when I did this: >select selection1, (object1 and i. 57 and (name c,o,n,ca)) >select selection2, (object2 and i. 57 and (name c,o,n,ca)) >rms_cur selection1, selection2 but when I try to specify the chain with the resid

[PyMOL] Broken DNA backbone from O

2005-01-10 Thread Aidong Han
Dear Buddies, My mac pymol can draw well a molecule directly downloaded from PDB. But when I put in the same molecule with different position outputted from O, its DNA backbone is completely blowed up (both in carton and ribbon types). I compared the two files and did find some subtle dif