pymol-0.97 cmd.read_pdbstr is dieing for remotely large pdb files. One
for example is 1DT7. I don't get a descriptive error:
/usr/local/bin/pymol: line 2: 10486 Segmentation fault
/usr/bin/python /usr/local/lib/python2.3/site-packages/pymol/__init__.py
$*
Thanks,
Charlie
Hi there,
Sorry to post such a basic question, I'm new to PyMol and am having
trouble mastering some of the basics.
Suppose I have a pdb file with multiple chains, and want to select a
subset of residues from only 1 of those chains.
I've tried different commands but cannot seem to keep the sub
I use something like:
color blue, resi 10-20 and chain R
On Fri, 2004-11-19 at 09:57 -0500, A. Thomas Torello wrote:
> Hi there,
> Sorry to post such a basic question, I'm new to PyMol and am having
> trouble mastering some of the basics.
>
> Suppose I have a pdb file with multiple chains, and
Windows & Mac Users,
I've made a fundamental change to PyMOL's mouse interface, and would like to
hear what you think.
A while back, one of our insightful Merck colleagues made what I though was
an excellent point: "A mouse-click is not the same thing as a
mouse-click-and-drag." Thus, it occurr
Sphere transparency example included below...
ALPHA must preceed COLOR to be effective.
PyMOL does not yet do a global sort of tranparent triangles, so there will
be artifacts in OpenGL. Raytracing should look fine however.
# from within a .py OR .pym file...
from pymol.cgo import *
from pymol
On Wed, 17 Nov 2004 10:48:49 -0800 (PST), Thomas Stout
wrote:
Hi All --
Recently I've noticed a growing number of questions
being posed to the PyMOL mailing list that never seem
to get responses. I infer from this that one or both
of two things are happening: either 1) list members
that kn
version 0.98 (beta 07 and beta 17) loads PDB IS 1DT7 just fine. It's a little
slow, but it works! Are you sure you don't have "auto-zoom" off? I turn
auto-zoom off by default and as a result some entries (like 1DT7) load but are
not visible. Clicking the "zoom" button brings it into the cent
