RE: [PyMOL] Coloring gradient

2004-11-03 Thread Peter Teriete
Thanks to all for the help so far. I'm getting there, but am currently pondering about the definition of the palette_dict. I wanted to add a color gradient such as grey_yellow, as the green_yellow didn't work as well as I was hoping for. I'm not entirely sure what the color codes refer to. i.e.

[PyMOL] Re: ribbon view of c-alpha only coordinates

2004-11-03 Thread Cameron Mura
Cathy, Set the ribbon_trace param to 1 to get a connected C-alpha trace, as in: load sample_CAs.pdb set ribbon_trace, 1 show ribbons Cameron === pymol-users-requ...@lists.sourceforge.net wrote (on 11/01/2004 09:05 PM): === Subject: [PyMOL] ribbon view of c-alpha only coordinates From: Ca

[PyMOL] label size

2004-11-03 Thread Mario Sanches
sorry if this question has ever been answered before but I couldn´t find it. Is there a way to change the label size? I tried using ¨set label_font_id, 4¨, which gives me the biggest font, but it is not enough. Is there another way? Another question, sometimes when I render some labeled figur

Re: [PyMOL] stereo projection with PyMOL

2004-11-03 Thread D. Joe Anderson
On Mon, Nov 01, 2004 at 09:45:04PM +0100, EPF (Esben Peter Friis) wrote: > > We have great succes with PyMOL stereo on a two-projector system: > - A Linux box with a Nvidia Quadro card provides the graphics (around > $2000) > - Two standard DLP projectors ($1500 each) > - 2 Circular po

Re: [PyMOL] exporting surfaces

2004-11-03 Thread D. Joe Anderson
On Wed, Oct 20, 2004 at 09:15:55AM -0600, C Want wrote: > > I wrote a cheap hack a while back to produce STL output for the > Connolly surfaces in pymol to help send some models to a 3D printer. > Please see these previous messages for a 'patch' and some pictures: > > http://sourceforge.net/mail