[PyMOL] reiterating a ccp4 map problem

2004-09-28 Thread Jacob Corn
This question was posted by someone else in January, but no solution was ever described. I'm currently running up against the same problem and would very much like to know if there is a solution, or if I'm stuck in bug-land. I have several CCP4 maps that have been calculated over the entire un

Re: [PyMOL] reiterating a ccp4 map problem (erratum)

2004-09-28 Thread Jacob Corn
Oops. I actually used mapmask to extend the map over the unit cell. Apologies. Jacob Corn wrote: This question was posted by someone else in January, but no solution was ever described. I'm currently running up against the same problem and would very much like to know if there is a solution, o

[PyMOL] Trouble with rendering in ball and stick

2004-09-28 Thread jwallen
Hi, I am having issues with rendering in pymol, and I'm hoping someone out there can help. I am trying to render an image with everything in ball and stick. The problem is that some of the residues/cofactors are rendering as spheres, while others remain in ball and stick. Despite what I try, they

Re: [PyMOL] reiterating a ccp4 map problem

2004-09-28 Thread Matt Franklin
Jacob Corn wrote: This question was posted by someone else in January, but no solution was ever described. I'm currently running up against the same problem and would very much like to know if there is a solution, or if I'm stuck in bug-land. I have several CCP4 maps that have been calculate

RE: [PyMOL] Trouble with rendering in ball and stick

2004-09-28 Thread Warren DeLano
Jamie, # first, just show sticks hide all show sticks # for uniform-radius balls, use the stick_ball settings set stick_ball, on set stick_ball_ratio, 2.5 set stick_radius, 0.12 # for variable radius balls, use scaled spheres show spheres set sphere_scale, 0.2 set stick_radius, 0.12 Cheers,