[PyMOL] rgb to cmyk woes

Hi all, I'm trying to prepare some figures for publication and of course the journal requires them in cmyk format. I have produced the images in pymol using the cmyk color space and saved them as png files. However, the png files themselves are in 24 bit rgb format if I'm correct. Trying to s

RE: [PyMOL] rgb to cmyk woes

Roger, CMYK and RGB are non-equivalent, and there will always be some mangling like what you describe. The CMYK color mode in PyMOL is an attempt to constrain PyMOL to using the a subset of RGB values that can be mapped reliably into the CMYK color space, at least via Photoshop. It's not a perfe

[PyMOL] Two maps subtraction?

Dear pymol-users, It is possble to subtract the values written in two diffrent maps in Pymol. Maps of electrostatic potential are in AVS format (generated by MEAD). Best regards, Votyakov Kirill Center of Biophysics MIPT

RE: [PyMOL] ATI Mobility Radeon 9000 Problems (?)

Hi All, The crash problem with some rate combinations of Radeon hardware and drivers has been identified and eliminated. Thanks to everyone who responded. This turned out to be an issue of the driver not completely flushing the OpenGL pipeline before returning pixels from the display buffer.

[PyMOL] PDB to DXF

Hi, Is it possible to convert a .pdb in a .dxf (AUTOCAD) file? Does anyone know how? Thanks in advance, andre ambrosio PhD student cbme/ifsc/usp - brazil

Re: [PyMOL] PDB to DXF

A quick Google for "pdb dxf" suggests that there are a couple: http://www.okino.com/conv/imp_pdb.htm http://www.danforthcenter.org/smith/MolView/Writeup/file.htm ... although this article http://www.sciencemag.org/cgi/content/full/281/5384/1814a suggests that MolView's DXF output is poor. hth, G

Re: [PyMOL] rgb to cmyk woes

On Thu, 16 Sep 2004 12:23:01 +0100, Roger Dodd wrote [snip] > correct. Trying to subsequently convert them to cmyk format tiff > files in photoshop or coreldraw results in all the colors being > mangled (becoming duller and darker). This may be a result of an inappropriate colour-space profile b

[PyMOL] building pymol on sgi irix 6.2 gcc 2.95.2

Hi Warren and all, I'm trying building pymol on sgi irix 6.2 gcc 2.95.2 (I got root access to that old sgi indigo2 extreme irix 6.2, and got a 13W3 to VGA cable to connect it to my sony g520 monitor, and it works great.) I installed gcc2.95.2, and am building the external dependencies for py

Re: [PyMOL] rgb to cmyk woes

Dr Charles S. BondUniversity of Dundee Tel: +44-1382-348325 Honorary Lecturer Dow St, Dundee Fax: +44-1382-345764 BBSRC David Phillips Fellow DD1 5EH, Scotland c.s.b...@dundee.ac.uk School of Life Sciences http://stein.bioch.dundee.ac.uk/~charlie >>> "Richard Ball"

Re: [PyMOL] building pymol on sgi irix 6.2 gcc 2.95.2

Hi, I restarted the installation from unix sources as released on pymol sourceforge page, made the appropriate changes to build.com in the ext directory and now it is compiling away quite happily so far, there must have been an error i introduced while I was trying to build with gcc 2.7 prev