[PyMOL] interdomain angles

2004-09-06 Thread Wen Hwa Lee, Ph.D.
Hi all, I would like to know if there is a way of calculating interdomain angles (like between two EGF domains), preferably by directly outputting the tilt, skew and twist angles. Thanks! Wen Hwa Lee Universite Paris V

[PyMOL] alignment

2004-09-06 Thread Andreas Förster
Hey all, and especially Warren, I've been playing around with alignment recently and was wondering what exactly is going on when I run the command 'align'. As I understand it, a combination of sequence and structural alignment is performed. Here is my output from a recent alignment: Match: rea