[PyMOL] transparent(better) gives error!

2004-08-25 Thread Ramesh Sistla
Hi List! When i try to set Action > Preset > ligand_sites > transparent(better) for any protein, I get the following error: Traceback (most recent call last): File "/soft/pymol/modules/pymol/parser.py", line 255, in parse exec(com2[nest]+"\n",pymol_names,pymol_names) File "",

[PyMOL] ATI fglrx 3.11 drivers for Radeon 8500 LE with linux 2.6 kernel, quad buffered stereo on sony G520???

2004-08-25 Thread Dr. Daniel James White PhD
Hi has anyone had any luck getting quad buffered stereo with the new ATI linux drivers, fglrx 3.11 I wondered if any one has a working XFree86 config file? my setup is ATI fglrx 3.11 drivers for Radeon 8500 LE with linux 2.6 kernel (fedora core 2), trying to get quad buffered stereo on sony

[PyMOL] Re:Pymol and batch-queue jobs

2004-08-25 Thread Bhyravbhatla, Balaji
Hi, We have a cluster that I would like to use for making images and have PBS running on there. Can you please share details about how you have set it up? Do you have pymol on all nodes? Is it parallelized or each frame (of the movie) is rendered on individual nodes? Thanks for any guidance. Bala

[PyMOL] External GUI window problem

2004-08-25 Thread Rinku Jain
Hi Everybody I am having a problem with pymol on a Macintosh OS X system. When I start the program, the viewer window comes up but I cannot see the external GUI Do I need to re-install the program ? Thanks in Advance ___ Do you Yahoo!? Win 1 o

[PyMOL] Re: vmd-l: ATI fglrx 3.11 drivers for Radeon 8500 LE with linux 2.6 kernel, quad buffered stereo on sony G520???

2004-08-25 Thread John Stone
Hi, I've tried the same thing on an ATI FireGL X1, but haven't had any luck so far. I've never gotten it to work yet. I recommend sending bug reports to ATI, I've done so but haven't heard back yet. The more the merrier. :) John Stone v...@ks.uiuc.edu On Wed, Aug 25, 2004 at 11:44:24AM +