[PyMOL] map problems

2004-07-09 Thread rbaxter
Dear All, I have an electron density map that apears to show something in O, but when I display it in PyMOL the map seems to be shifted in some way, that is, I can see features with the same size, shape and relative orientation, but they no longer coincide with the atomic model. I suspect a proble

[PyMOL] selecting residues around

2004-07-09 Thread Jason Thomas Maynes
Hello: I am trying to highlight residues that are within 4A of a chain (but in a different chain): I have tried: show sticks, c. c around 4 & c. a show sticks, c. a within 4 of c. c Both show some residues within 4A but not all. For example, I can measure a distance of 3.3 A between 2 atoms in