Hello,
I would like to superimpose two structures using c-alpha atoms of few
residues (not all c-alpha atoms). Can I do this in PyMOL?
Thanks,
Madhavi
-Original Message-
From: pymol-users-ad...@lists.sourceforge.net
[mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
pymol-users-
Nalam,
Yes, the pair_fit command is probably the easiest way to specify a few CA
atoms over which to fit...
For example:
load prot1.pdb
load prot2.pdb
pair_fit prot1///11-26/CA, prot2///34-49/CA
would superimpose prot1 on prot2 using C-alphas from residues 11-26 in prot1
and 34-49 in pro
Hi Warren,
Thanks for the email. I want to superimpose two structures (pdb codes
1HPV, 1HSG) using residues 1-9, 86-99 @ca in both chain A and chain B
(total of 46 atoms). How do I do this?
So long,
Madhavi
-Original Message-
From: Warren DeLano [mailto:war...@delanoscientific.com]
Sent:
Madhavi,
I think the following will work:
load 1HPV.pdb, 1hpv
load 1HSG.pdb, 1hsv
pair_fit 1hpv//A+B/1-9+86-99/CA, 1hsg//A+B/1-9+86-99/CA
Cheers,
Warren
--
mailto:war...@delsci.com
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
Voice (650)-346-1154
Fax (650)-593-4020
