Mark,
You don't have to reboot, go to the process tab of windows task manager
and end the python image underlying PyMOl.
Jules
Mark Wilke wrote:
Is there any way of stopping a ray trace once it has been started without
closing pymol? Some of my ray trace jobs take too long and I want to sto
On Jun 21, 2004, at 17:36, Warren DeLano wrote:
Konrad,
There are several options for loading map data into PyMOL now:
XPLOR (format=xplor)
CCP4 (format=ccpy)
O/BRIX (format=brix)
Good to know! At least the CCP4 one is documented, but being a binary
format, it's a bit of a pain to use.
Y
On Jun 22, 2004, at 11:41, Konrad Hinsen wrote:
I'll see if I can get CCP4 format to work in a reasonable amount of
time...
Actually I went for XPlor in the end, after getting a useful hint:
http://cns.csb.yale.edu/v1.1/tutorial/text.html
Problem: the XPlor format does not specify th
Konrad,
Using crystallographic formats like XPLOR for generic volume
visualization is tricky because ultimately the map must be aligned on a grid
which passes through the origin. In other words, the grid spacing must
include the origin even if the map itself does not. In order to shift t
Hi All,
I know there was a question regarding this some time ago, but didn't see
any reply
saying how to do it or a suggesting a possible workaround.
I have a surface coloured by the underlying residues and am wondering if
it is possible
to colour an additional part of the surface if it's withi
Peter,
Assuming you have an existing selection
load my_prot.pdb
select my_sel, resi 100
You can use the within/of operation...
color cyan, my_prot within 15 of my_sel
color red, my_prot within 10 of my_sel
If you needed to exclude the region immediately around the selection, you
co
On Jun 22, 2004, at 16:52, Warren DeLano wrote:
Using crystallographic formats like XPLOR for generic volume
visualization is tricky because ultimately the map must be aligned on
a grid
which passes through the origin. In other words, the grid spacing must
Bad news. My map has a gri
On Tue, 22 Jun 2004, Konrad Hinsen wrote:
> Bad news. My map has a grid spacing of 2 angstrom, I need better
> resolution than that for placing it.
>
> So now I am trying chempy.brick.
If you're using the CVS version of PyMOL, you might try DX multigrid
formatted files. You can find some brief d
On Jun 22, 2004, at 19:29, Konrad Hinsen wrote:
So now I am trying chempy.brick. I just installed NumPy into the
internal Python (business as usual). However, while I can generate
bricks, any isomesh I make from
After recompiling PyMOL, it works fine. Who needs weird file formats
when one ca
