PyMOLers,
I just finished the first beta version of PyMOL with a built-in sequence
viewer (96beta6) and am looking for some experienced LINUX PyMOL users who
are willing to poke around with this new stuff and provide feedback or
suggestions.
Screenshot & download at:
http://delsci.com/beta
NOTE
Hello everybody,
I have tried getting the electrostatic in pymol using the following commands:
load molecule.pdb, mol-object
load grasp-map.phi, map-object
ramp_new ramp-name, map-object
show surface, mol-object
set surface_color, ramp-name, mol-object
The problem is getting
I have a double helix shown in blue and want to highlight certain bases in
yellow. I have tried the selection in a similar way to amino acids but that
doesn't seem to work...
select junk, TRF1_dna ,chain X, resi 7-9
The object TRF1_dna contains both strands of DNA. The chains are labelled X
and Y
> I have tried getting the electrostatic in pymol using the following commands:
> load molecule.pdb, mol-object
> load grasp-map.phi, map-object
> ramp_new ramp-name, map-object
> show surface, mol-object
> set surface_color, ramp-name, mol-object
> The problem is getting the phi map in grasp. Can
Hello to all,
I have a protein that contains a substrate and for which I want
to create a picture. For the substrate I would like to use a ball
and stick representation such that the spheres are colored by
atom type and the sticks are on a single color. My problem
is that I have not been able to g
