Re: [PyMOL] hardware stereo using pymol

2004-01-19 Thread Andreas Aemissegger
On Saturday 17 January 2004 03:25, Dr. S. Frank Yan wrote: > I'm using stereographics crystaleye with e-2 emitter > and Quadro2 Pro graphics card, which does support the > emitter. I am able to set the stereo on, and the > screen starts to flick a little; however, the emitter > is not turned on by

Re: [PyMOL] homologous alignments?

2004-01-19 Thread camille
Hello, I am unable to read the archive at the moment so can anyone tell me the command that allows colouring of the edge of helices and strands (usually grey). I think this was posted recently but I don't have it in any of my saved scripts. Many thanks, Camille Dr Camille Shamm

RE: [PyMOL] homologous alignments?

2004-01-19 Thread Warren L. DeLano
Camille, If I understand your question, you're looking for the setting which creates a discrete color transition at the edges of helices and strands, instead of blending. It is: set cartoon_discrete_colors, on For example color grey, name ca color yellow, ss s and name ca color red, ss

RE: [PyMOL] working directory

2004-01-19 Thread Warren L. DeLano
Lesley, If you always want PyMOL to start in a different directory, you can create a ".pymolrc" file in you home directory with a command like cd /users/lesley/scripts Which will be executed every time you start PyMOL. Cheers, Warren -- mailto:war...@delanoscientific.com Warren L. DeLa

Re: [PyMOL] hardware stereo using pymol

2004-01-19 Thread Dr. S. Frank Yan
Hi, Thanks for the reply. We set them; however, it is still not working yet. I can see the pymol screen is flickering, but the emitter is apparently not turned on (no red light). --- Andreas Aemissegger wrote: > On Saturday 17 January 2004 03:25, Dr. S. Frank Yan > wrote: > > I'm using stereo