There are a few commands that I've been using for which I can't seem to
find a command line equivalent:
show/hide mainchain atoms
show/hide sidechain atoms
select atoms for 'dist' command (H-bond creation)
I would appreciate some help for these. Scripting is wonderful but
somewhat tricky without
Nick,
> There are a few commands that I've been using for which I can't seem
to
> find a command line equivalent:
This actions can be performed using selections with standard atom
identifiers:
> show/hide mainchain atoms
show lines, object-nameca+c+n+o+h
hide lines, object-nameca+c+n+o+
Eric,
PyMOL's "fuse" command will merge two distinct objects into a
one while forming a bond. For example:
fragment arg
move y,8
fragment glu
zoom
fuse arg/n, glu/o
delete arg
zoom glu
will create an arginine and a glutamine, and then copy the arginine into
the glutamine object, while f
