[PyMOL] Re: PyMOL-users digest, Vol 1 #381 - 4 msgs

2003-08-05 Thread Marc Saric
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 pymol-users-requ...@lists.sourceforge.net wrote: | If you have strong objections to these changes, please speak up. Nope, sounds good. I always thought it was a bit weird that raytracing produced different line-radii out of the box (i.e. different f

[PyMOL] cartoons through nonstandard residues

2003-08-05 Thread David A. Horita
Hi, When I try to draw a cartoon through the backbone of a nonstandard residue (in this case, phosphotyrosine), the cartoon strand stops prior to the PTR and starts after. How do I get a continuous strand through the phosphotyrosine backbone (or other residues, in the general case)? Ribbons se

RE: [PyMOL] cartoons through nonstandard residues

2003-08-05 Thread Warren L. DeLano
David, The problem: PyMOL sorts PDB hetatms apart from molecules. The solution: alter all, type='ATOM' sort rebuild I'm thinking about disabling this behavior before the next release. Cheers, Warren -- mailto:war...@delanoscientific.com Warren L. DeLano, Ph.D. Principal Scientist DeLano

RE: [PyMOL] cartoons through nonstandard residues

2003-08-05 Thread Warren L. DeLano
David, The problem: PyMOL sorts PDB hetatms apart from molecules. The solution: alter all, type=’ATOM’ sort rebuild I’m thinking about disabling this behavior before the next release… Cheers, Warren -- mailto:war...@delanoscientific.com Warren L. DeLano, Ph.D. Principal Scientist DeLano Scie