[PyMOL] PyMOL Lag

2003-07-16 Thread Jules Moore
PyMOLians and Warren, I am using Redhat Linux 7.1 to run PyMOL. It seems to be slightly lagging. Is this just because of the graphics card? On another computer, a Mac, it runs quickly and smoothly. Does anyone have any advice on how to spice up the beauty that is PyMOL? Thanks, Jules

Re: [PyMOL] PyMOL Lag

2003-07-16 Thread Jules Jacobsen
Jules Moore wrote: PyMOLians and Warren, I am using Redhat Linux 7.1 to run PyMOL. It seems to be slightly lagging. Is this just because of the graphics card? On another computer, a Mac, it runs quickly and smoothly. Does anyone have any advice on how to spice up the beauty that is P

[PyMOL] weird artifact with cylindrical helices

2003-07-16 Thread Nat Echols
I'm trying to make some figures for a review, and I'm seeing weird little partial spheres show up when I try to ray-trace a polymerase structure: http://bioinfo.mbb.yale.edu/people/nat/weird.png They're in the bottom third of the picture, and seem to show up in the same location in the structure

RE: [PyMOL] weird artifact with cylindrical helices

2003-07-16 Thread Warren L. DeLano
Nat, That is what a ray-tracer hash-table bug looks like -- some of those cylinders aren't being properly registered in 3D space and are then missed. In order to fix this problem, it would sure help if you could send me a session file or pdb + script that can reproduce the problem. Thank