Hi,
Sounds line you didn't have a correct installation of the Xig
summit2.2???
I thought the installation was supposed to move all the old mesa/GL
stugff to a back up and replace them with
the acellerated xig ones?
Have you contacted the guys at Xig?
If you have paid the 99 dollars or whateve
Flip,
Thanks for answering that question -- actually, the new PyMOL release
(version 0.88, downloadable from http://pymol.sf.net ) makes this a
little easier.
ray angle=-3
png image1.png
ray angle=3
png image2.png
This is superior to using the "turn" command because it also rotates the
light
On Wed, 4 Jun 2003, Warren L. DeLano wrote:
>
> ray angle=-3
> png image1.png
> ray angle=3
> png image2.png
>
This method of generating stereo images is correct, but also leads to
quite a bit of vertical parallax (the so-called "toe-in" projection) -
this is why many stereoscopic images are ha
>> ray angle=-3
>> png image1.png
>> ray angle=3
>> png image2.png
>>
>
>This method of generating stereo images is correct, but also leads to
>quite a bit of vertical parallax (the so-called "toe-in" projection) -
>this is why many stereoscopic images are hard to view properly (usually,
>edges of
You're both right.
"Perfect" ray-traced stereo pictures are impossible in PyMOL
because the built-in ray tracer is limited to an orthographic
projection. Unfortunately, I optimized all the vector code for this, so
we're talking a major rewrite to change that : (.
Rotating by a sm
Very true.
It would be great to have a feature where we have access to a camera
object, with control of the:
1. camera root (where the camera)
2. camera target (where it's looking)
3. focal length control
4. and all associated 6D transforms.
:)
JP
-- Forwarded message --
Da
>Warren,
>Can you tell me how to get the roving density to active?
>Just downloaded v88 and this looks like a nice new feature.
At a minimum, load a map and a model. Then
set roving_detail, 1
set roving_map1_name, map-name
to change level:
set roving_map1_level, map-level
to change
I experimented with this method a decade ago when I was working
on a stereo 16mm film for the late Kent Wilson. The parallel
line-of-sight method was described in a popular book on stereo methods
.. sorry I don't remember the reference and it would take a lot of
digging to find it.
To be honest,
You do, at least in a way. It's called...
view=cmd.get_view()
and
cmd.set_view(view)
...
Adapted from kristian's wonderful tips page:
http://www.rubor.de/bioinf/pymol_tips.html
Meaning of the get_view output
Of the 18 numbers in the output array,
0-8 is the 3x3 rotation matrix,
9-11 is th
Thanks for taking the time to answer. I understand the concepts of blending
normals and the importance of vertex ordering in terms of normal generation.
Is vertex ordering important to PyMol CGOs (after normals have already been
generated).?
My ray traced images look good, however, they can only
Hi All,
What is the simplist way to draw a C-alpha trace using pymol?
Martin
Martin Kienetz
429 MSB
Department of Biochemistry
University of Alberta
Edmonton AB
T6G 2H7
(780) 492-2422
On Wed, 4 Jun 2003, Richard Gillilan wrote:
>
> The fact that points on the object that are very close to the viewer or
> very far away appear double (and out of focus) is also exactly what
> happens with real vision. Here's an experiment to try:
>
True, but you're describing horizontal (distance
That's great, thanks for letting me know Warren!
I'll work on creating motion paths for the camera to move along and get
back to this list about it.
:) JP
Date: Wed, 4 Jun 2003 13:26:52 -0700
From: Warren L. DeLano
To: 'JP Cartailler' , pymol-users@lists.sourceforge.net
Subject: RE: [PyMOL] RE:
Martin,
hide
show ribbon
set ribbon_sampling,1
And if your model only contains CA atoms, you'll also need to issue:
set ribbon_trace,1
Cheers,
Warren
--
mailto:war...@delanoscientific.com
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
Voice (650)-346-1154
Fax (650)-593-4
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