[PyMOL] moving/fitting

2002-11-23 Thread Kristl Adams
I'd like to fit the porphyrin of the alpha subunit of Hemoglobin on top of the porphyrin of myoglobin ( in order to compare the heme pockets ). I am a new user of Pymol and have been fiddling with it to become familiar, but am having no luck in this area. Please send any useful hints my way. Tha

[PyMOL] A little script for massaging pdb files

2002-11-23 Thread Michael George Lerner
The electron densities of Carbon, Nitrogen and Oxygen look basically the same to crystallographers. So, sometimes they get them confused in pdb files. In particular, one often has to flip the orientation of the side chains in Asn or Gln. Also, this means that the Nitrogens may be placed incorrec

RE: [PyMOL] moving/fitting

2002-11-23 Thread Richard Kho
Hi Kristl, You can change the mouse to "edit mode" from the Mouse menu. Here's a link to a response from Warren to a similar question... http://sourceforge.net/mailarchive/message.php?msg_id=2376446 hope that helps. Richard -Original Message- From: Kristl Adams [mailto:kri...@physi