Dear Pymolers,
Since the Mac OSX version of Pymol does not have a menu interface that has a
pull-down menu to view and alter the settings, is there any way to display
and alter the full set of settings from the command line? I keep forgetting
what the relevant command line syntax is for changing
How do I create a movie in pymol in which I rotate a molecule about the
y-axis 360 deg and then immediately do a 360 deg rotation about the
x-axis? I couldn't figure it out from published examples.
Thanks in advance
Craig L. Smith, Ph. D.
Molecular Microbiology
Washington University School o
This is undocumented:
To get a list of settings:
from pymol import setting
print setting.get_name_list()
To get the current value of a setting:
print setting.get_setting_text("bg_rgb")
print setting.get_setting_text("gamma")
To get a list of names with values:
print map(lambda x:[x,setting.ge
mset 1 x360
movie.roll 1,180,1,axis=y
movie.roll 181,360,1,axis=x
> -Original Message-
> From: Craig Smith [mailto:boiler...@mac.com]
> Sent: Wednesday, October 30, 2002 11:43 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] making a two step movie in pymol
>
>
> How do I cr
Hi Pymolers,
I am trying to show a surface on a small molecule in the active site.
I can create surfaces on protein residues without any problem, but I
can not get a surface around the small organic structure. I have tried
this on an SGI and using the 0.84beta on OS X.
I am obviously missi
By default, PyMOL doesn't surface PDB HETATMs.
To surface all atoms,
set surface_mode=1
To surface all atoms except hydrogens,
set surface_mode=2
Cheers,
Warren
> -Original Message-
> From: Kersey Black [mailto:kbl...@jsd.claremont.edu]
> Sent: Wednesday, October 30, 2002 3:09 PM
>
