Dear pymolers,
Many of you are interested in SS.
I think you must be experts on this.
So, although this is not a pymol problem,
I hope that you can give me some information.
I've got some MD simulation results,
and I calculated the phi-psi angles of each amino acid.
(Yeah I know that phi-psi calc
Le Wed, 31 July 2002, Luca Jovine a écrit
> BTW, do people on the PyMol bulletin
> boar normally post (or are at least expected to post) summaries of the
> answers they received to a particular problem?
Depends. On a low-traffic list like this one, everybody can easily check all the
answers i
Hello:
To show the allowed torsion angles, run your protein through procheck
(available at http://www.ccp4.ac.uk/main.html), this will show the allowed
areas.
I would say that the convergence of an MD simlulation cannot be told by
torsion angles since the protein conformation with the most allo
Hi Liang:
The most up-to-date contour on the Ramachandran plot you can find at the
molprobity website: http://kinemage.biochem.duke.edu/molprobity/
It's a bit indirect, you have to submit a structure and then it will
give back a Ramachandran plot - but this plot agrees pretty well with
what we t
