Dear PyMOL users,
in case that you may find the current stereo parameters not optimal, here
are my suggestions:
put the following lines in your .pymolrc file (copy from
/pymol/sample.pymolrc):
set stereo_angle=6.0
set stereo_shift=0.0
At least on our SGIs these settings produce a significantly b
I start to work in computational chemistry and I use as imput file of my
algorithm a pdb standard format, I need all atoms for my calculation
(also hydrogens), but frequently the examples I found are without
hydrogens. I have used the command h_add and it works: it add hydrogens,
but the names
Addis,
Yes, I am aware of this issue and plan to address it in later
versions. Hydrogen adding needs to become residue-aware.
Note that when you are building amino acids, they do start out with
qausi-correct hydrogen names. There is still some ambituity as to which
convention is followed fo
Dear PyMol users:
I recently upgraded to WindowsXP from WindowsMe, in doing so I had some
problems that ultimately resulted in wiping out my hard drive. I have tried to
downlad and reinstall PyMol and I am experiencing some difficulty. I have ben
able to download and install Python-2.1 successf
