Hi Dan and Thomas,
### Had to send message again due to size restriction, now image can be found a
link ###
Perhaps this will do the trick,
Show the protein as surface and cartoon then set the surface to almost
invisible:
set transparency, 0.99
Then set the surface transparency to be angle de
Hi Dan,
I think in PyMOL you can only do this in two steps and compose the two images,
e.g. with ImageMagick.
# white background
bg white
# step 1
as surface
set ray_trace_mode, 2
png surface.png, ray=1
# step 2
hide surface
show cartoon
set cartoon_cylindrical_helices
set ray_trace_mode, 1
pn
