RE: [PyMOL] setting correct bond length

2006-03-03 Thread Warren DeLano
Stefan, As recommended, I suggest loading the structure in using a file format that contains explicit connectivity information (MOL/SDF or MOL2). PyMOL generally does okay inferring protein connectivity from coordinates alone, but that is about it. another thing you can do is unbond the atoms

Re: [PyMOL] setting correct bond length

2006-03-03 Thread Marc Bruning
try converting the coordinates into mol-format. On Friday 03 March 2006 13:05, Gerhardt, Stefan wrote: > Dear all, > > I am trying to display a bound azetidine ring, but pymol is drawing also a > bound between the C2 and C4 ring carbons. > > <<...OLE_Obj...>>bond length N-C 1.46Å, C-C 1.54Å a