Re: [PyMOL] reorienting a chain

2009-06-09 Thread Vivek Ranjan
x27;re looking for. > > Cheers, > Warren > > From: Vivek Ranjan [mailto:vran...@gmail.com] > Sent: Wed 6/3/2009 9:26 AM > To: Warren DeLano > Cc: pymol-users@lists.sourceforge.net > Subject: Re: [PyMOL] reorienting a chain > > Hello Warren, > > Th

Re: [PyMOL] reorienting a chain

2009-06-03 Thread Warren DeLano
Wed 6/3/2009 9:26 AM To: Warren DeLano Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] reorienting a chain Hello Warren, Thank you very much for your advice. I guess I was not being very clear. what i meant was that i would also like to save the coordinates of this reoriented pol

Re: [PyMOL] reorienting a chain

2009-06-03 Thread Vivek Ranjan
Hello Warren, Thank you very much for your advice. I guess I was not being very clear. what i meant was that i would also like to save the coordinates of this reoriented polymer. Let me be clear: I have a polymer aligned along y-axis. I change some of the dihedral angles. As a result, the chain

Re: [PyMOL] reorienting a chain

2009-06-02 Thread Warren DeLano
You can save a copy of the original and then superimpose the copy back onto it # using "fab" command from the latest 1.2 beta to create poly-ala fab AAA, pol # create copy of the polymer create copy, pol # adjust a torsion set_dihedral pol///4/N, pol///4/CA, pol///4/C, pol///5/N, 6