Re: [PyMOL] question about ray after alter and rebuild

2005-10-24 Thread Tsjerk Wassenaar
Hi Pete, Check on the sections "clipped_by" and "bounded_by" in the povray documentation. You can clip with a defined plane, and can actually do so using different planes for different objects. Alternatively you can use other objects to clip. Another possibility is to use CSG difference or interse

Re: [PyMOL] question about ray after alter and rebuild

2005-10-24 Thread Peter Adrian Meyer
> Or you can dump to povray and render at whatever resolution you want, > but the image will not resemble exactly what is seen in the pymol viewer > window. > I've noticed problems with the clipping planes (z axis) whenever I've tried this. Specifically, the near clipping plane is apparently not

Re: [PyMOL] question about ray after alter and rebuild

2005-10-24 Thread Sabuj Pattanayek
Or you can dump to povray and render at whatever resolution you want, but the image will not resemble exactly what is seen in the pymol viewer window. Peter Adrian Meyer wrote: >>multiple structura alignment. I pointed out three structures for further >>processing within all 12 structures. However

Re: [PyMOL] question about ray after alter and rebuild

2005-10-24 Thread Peter Adrian Meyer
> multiple structura alignment. I pointed out three structures for further > processing within all 12 structures. However, when I try to ray the > structural > resolution (only 3 of all 12 structures) to 2000x2000 with 'ray 2000, > 2000', I > always received a low resolution (as screen resolution o

Re: [PyMOL] question about ray after alter and rebuild

2005-10-23 Thread Kristian Rother
--- Chung-Ming Yu wrote: > Dear all: > > I changed the topology of secondary structures with > 'alter' commands and then > I used 'rebuild' command to show the new topology of > secondary structures in > multiple structura alignment. I pointed out three > structures for further > processing wit