Thanks Gabriel and David for the useful suggestion.
Best Regards,
Subha
On Wed, Oct 19, 2016 at 12:11 PM, David Hall wrote:
> I think the answer is to just use save, not that save_transformed function.
>
> -David
>
> On Oct 19, 2016, at 1:47 PM, Subha K wrote:
>
> Hi there,
>
> I am trying to
I think the answer is to just use save, not that save_transformed function.
-David
> On Oct 19, 2016, at 1:47 PM, Subha K wrote:
>
> Hi there,
>
> I am trying to save the transformed coordinates of an object after performing
> an alignment. I came across the save_transformed.py
> [https://py
Subha K,
You can just call cmd.save or save on the object name as so:
fetch 1oky 1t46, async=0
align 1oky, 1t46
save /tmp/1oky_transformed.pdb, 1oky
PyMOL will write out the transformed coordinates of 1oky into the pdb file. The
structure of the alignment command is such that pymol transforms t
