Hi James,
This is a known issue. Try disabling undo before using the command.
Best,
Jarrett Johnson
On Mon, Feb 14, 2022 at 10:37 AM James Procter (Staff) <
j.proc...@dundee.ac.uk> wrote:
> Dear pymol-users
>
> Could anyone confirm that the following test of the pair_fit command
> causes a cra
Thanks Jarret - works perfectly.
From: Jarrett Johnson
Sent: 16 February 2022 18:10
To: James Procter (Staff)
Cc: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] pair_fit crashes Pymol 2.5.2 (incentive, OSX) ?
CAUTION: This email originated from
Hi Jeremy,
If the proteins have significant homology, then you can use the align command:
align prot1ca,prot2
which will perform a sequence alignment of prot1 against prot2, and then an
optimizing fit using the CA positions. I'm not sure if the help text for align
got into 0.82, but the n
* Jeremy Craven [2002-09-26 09:59] wrote:
> 2) Anyhow, (and assuming that I might want to do alignments my own way
> anyhow),
> I created a script which read in an alignment and created a big long pair_fit
> command of the form
>
> pair_fit (tbr and resi 187 and name ca),(bs and resi 170 a
