Re: [PyMOL] hydrogen-bonds detected in the protein-ligand complexes

2022-03-31 Thread EDUARDO JOSÉ AZEVEDO CORREA
Good Question I like to know Too. And about Hydrophobic interaction , Is it possible to show the hydrophobic interactions on pymol too? Em qui., 31 de mar. de 2022 às 06:49, Enrico Martinez < jmsstarli...@gmail.com> escreveu: > Dear Pymol users! > Another question related to the analysis of the m

Re: [PyMOL] Hydrogen bonds

2006-08-24 Thread Jerome Pansanel
Dear Selvaraj, You will find useful resources about hydrogen bonding with PyMOL on: http://www.rubor.de/bioinf/tips_modeling.html#addhbond Regards, Jerome Pansanel Le mercredi 23 août 2006 22:48, selva raj a écrit : > Dear Pymol users, >Would anyone tell me how to draw hydrogen bonds be

Re: [PyMOL] Hydrogen bonds

2006-08-24 Thread bgbg bg
Take a look at this link: http://www.rubor.de/bioinf/tips_modeling.html#addhbond It contains two simple examples and one python script. On 8/23/06, selva raj wrote: Dear Pymol users, Would anyone tell me how to draw hydrogen bonds between interacting atoms in a crystal structure of small

Re: [PyMOL] hydrogen bonds

2006-07-07 Thread Shantanu Sharma
On Fri, 2006-07-07 at 11:22 -0400, Nalam, Madhavi wrote: > Hello, > How do I draw a hydrogen bond between two atoms in PyMol? Please see: http://www.rubor.de/bioinf/tips_modeling.html http://www.rubor.de/bioinf/pml/hbond1.pml http://www.rubor.de/bioinf/pml/hbond2.pml http://www.rubor.de/bioinf/pm

RE: [PyMOL] hydrogen bonds

2002-02-10 Thread DeLano, Warren
> From: Daan van Aalten [mailto:d...@davapc1.bioch.dundee.ac.uk] > Is there an option to change the following parameters for > drawing hydrogen > bonds: > - thickness of the lines > - number of dashes > - label (on/off, and fontsize) The settings you need to change are: "dash_length" and "dash_