Hi Anasuya,
> I have around 19,200 unique PDB files. Each of them have one or more
> ligands in it. For each ligand, I have to extract a zone which
> contains complete residues within 4.5Angstroms of the ligand [ i.e.
> ZONE1] and then extract another zone, which has complete residues
> within 4.5
>From a purely structural perspective you can look at the interface
residues script on the PyMOLWiki:
http://pymolwiki.org/index.php/InterfaceResidues
The interface could be detected by
run /path/to/interfaceResidues.py
fetch 1bm2
interfaceResidues 1bm2, c. A, c. L
But, you ma
Dear Kousik,
Sue Jones PROTORP server should do the trick:
http://bioinformatics.sussex.ac.uk/protorp
Cheers,
Thomas
On Wed, Dec 9, 2009 at 14:57, Kousik Kundu
wrote:
>
> Dear Sir,
> I, Kousik Kundu, am a Ph.D student at university of Freiburg,
> Germany. I am using Pymol for my rece
