Re: [PyMOL] format problem

2011-04-25 Thread Abhinav Verma
As Tsjerk pointed out!!.. it is exactly 8.3 ATOM604 OG SER A 77 37.493 60.526-103.507 1.00 26.47 O 123456781234567812345678 cheers, Abhi On Mon, Apr 25, 2011 at 12:59 PM, kanika sharma wrote: > in the y-z coordinate the 8.3% format is not there.. > >

Re: [PyMOL] format problem

2011-04-25 Thread kanika sharma
in the y-z coordinate the 8.3% format is not there.. On Mon, Apr 25, 2011 at 4:09 PM, Tsjerk Wassenaar wrote: > Hi Kanika, > > No, the spacing, or in this case the lack of it, is correct. The > coordinate section of the pdb file is %8.3f%8.3f%8.3f, i.e. each > coordinate eight characters wide wi

Re: [PyMOL] format problem

2011-04-25 Thread Tsjerk Wassenaar
Hi Kanika, No, the spacing, or in this case the lack of it, is correct. The coordinate section of the pdb file is %8.3f%8.3f%8.3f, i.e. each coordinate eight characters wide with three decimal precision. Cheers, Tsjerk On Mon, Apr 25, 2011 at 12:28 PM, kanika sharma wrote: > i have attached a

Re: [PyMOL] format problem

2011-04-25 Thread kanika sharma
i have attached a small section of the file after applying the matrix.. the spacing between x,y and z axis is abnormal part.pdb Description: Protein Databank data -- Fulfilling the Lean Software Promise Lean software pla

Re: [PyMOL] format problem

2011-04-25 Thread Tsjerk Wassenaar
Hi Kanika, > alter_state 1, 1a8y_a, 1a8y,(x,y,z)=(-0.5*x + 0.886025*y, 0.886025*x + >  0.5*y, -z) This doesn't work like that. It should probably be alter_state 1, 1a8y_a,(x,y,z)=(-0.5*x + 0.886025*y, 0.886025*x + 0.5*y, -z) > then i saved the molecule in pymol from file-->save molecule-->1a8y_